Structural Proteomics (2nd Ed., Softcover reprint of the original 2nd ed. 2015) High-Throughput Methods Methods in Molecular Biology Series, Vol. 1261
Coordonnateur : Owens Raymond J.
This updated and expanded volume reflects the current state of the structural protein field with improved and refined protocols that have been applied to particularly challenging proteins, notably integral membrane proteins and multi-protein complexes. Structural Proteomics: High-Throughput Methods, Second Edition begins by exploring the resources available for curation, annotation, and structure prediction in silico, and continues with methods for sample preparation of both proteins and crystals, as well as structural characterization techniques. Written for the highly successful Methods in Molecular Biology series, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols, and tips on troubleshooting and avoiding known pitfalls.
Practical and up-to-date, Structural Proteomics: High-Throughput Methods, Second Edition will aid researchers in expanding our knowledge of this vital and expansive area of protein science.
Part I: Bioinformatics and Data Management
1. Protein Structure Annotation Resources
Margaret J. Gabanyi and Helen M. Berman
2. PiMS: A Data Management System for Structural Proteomics
Chris Morris
3. Prediction and Analysis of Intrinsically Disordered Proteins
Marco Punta, István Simon, and Zsuzsanna Dosztányi
4. I-TASSER Suite: A Standalone Package for Protein Structure Prediction and Structure-Based Protein Function Annotation
Renxiang Yan, Jianyi Yang, Ambrish Roy, Dong Xu, Jonathan Poisson, and Yang Zhang
Part II: Soluble Proteins
5. Characterization and Production of Protein Complexes by Co-Expression in Escherichia coli
Matthias Haffke, Martin Marek, Martin Pelosse, Marie-Laure Diebold, Uwe Schlattner, Imre Berger, and Christophe Romier
6. The Production of Multi-Protein Complexes in Insect Cells Using the Baculovirus Expression System
Wassim Abdulrahman, Laura Radu, Frederic Garzoni, Olga Kolesnikova, Kapil Gupta, Judit Osz-Papai, Imre Berger, and Arnaud Poterszman
7. Production of Cell Surface and Secreted Glycoproteins in Mammalian Cells
Elena Seiradake, Yuguang Zhao, Weixian Lu, A. Radu Aricescu, and E. Yvonne Jones
8. Cell-Free Protein Synthesis Systems Derived from Cultured Mammalian Cells
Andreas K. Brödel, Doreen A. Wüstenhagen, and Stefan Kubick
9. Crystallization: Digging into the Past to Learn Lessons for the Future
Vincent J. Fazio, Thomas S. Peat, and Janet Newman
Part III: Membrane Proteins
10. Screening of Stable G Protein-Coupled Receptor Variants in Saccharomyces cerevisiae
Mitsunori Shiroishi and Takuya Kobayashi
11. Cell-Free Expression of G Protein-Coupled Receptors
Erika Orbán, Davide Proverbio, Stefan Haberstock, Volker Dötsch, and Frank Bernhard
12. GFP-Based Expression Screening of Membrane Proteins in Insect Cells Using the Baculovirus System
Nien-Jen Hu, Heather Rada, Nahid Rahman, Joanne E. Nettleship, Louise Bird, So Iwata, David Drew, Alex Cameron, and Raymond J. Owens
13. Methods for the Successful Crystallization of Membrane Proteins
Isabel Moraes and Margarida Archer
Part IV: Structural Characterization of Proteins
14. Application of In Situ Diffraction in High-Throughput Structure Determination Platforms
Pierre Aller, Juan Sanchez-Weatherby, James Foadi, Graeme Winter, Carina M.C. Lobley, Danny Axford, Alun W. Ashton, Domenico Bellini, Jose Brandao-Neto, Simone Culurgioni, Alice Douangamath, Ramona Duman, Gwyndaf Evans, Stuart Fisher, Ralf Flaig, David R. Hall, Petra Lukacik, Marco Mazzorana, Katherine E. McAuley, Vitaliy Mykhaylyk, Robin L. Owen, Neil Paterson, Pierpaolo Romano, James Sandy, Thomas Sorensen, Frank von Delft, Anna Warren, Mark Williams, David I. Stuart, and Martin A. Walsh
15. CD Spectroscopy: An Essential Tool for Quality Control of Protein Folding
Giuliano Siligardi and Rohanah Hussain
16. High Throughput Studies of Protein Shapes and Interactions by Synchrotron Small-Angle X-Ray Scattering
Cy M. Jeffries and Dmitri I. Svergun
17. Automated Structure Determination from NMR Spectra
Elena Schmidt and Peter Güntert
18. Solid State Nuclear Magnetic Resonance Spectroscopy for Membrane Protein Structure Determination
Peter J. Judge, Garrick F. Taylor, Hugh R.W. Dannatt, and Anthony Watts
19. Native Mass Spectrometry: Towards High-Throughput Structural Proteomics
Frances D.L. Kondrat, Weston B. Struwe, and Justin L.P. Benesch
Includes cutting-edge methods and protocols on structural proteomics
Provides step-by-step detail essential for reproducible results
Contains key notes and implementation advice from the experts
Includes supplementary material: sn.pub/extras
Ouvrage de 375 p.
17.8x25.4 cm
Ouvrage de 375 p.
17.8x25.4 cm