Neuroproteomics (2^nd Ed., Softcover reprint of the original 2nd ed. 2017) Methods and Protocols Methods in Molecular Biology Series, Vol. 1598

Part I: Current Reviews of Neuroproteomics Approaches and Applications

1. Neuroproteomics Studies: Challenges and Updates

            Naify Ramadan, Hussein Gazalah, Mohammad El-Sayyad, Mohamad El-Haress, and Firas H. Kobeissy

2. Progress and Potential of Imaging Mass Spectrometry Applied to Biomarker Discovery

            Jusal Quanico, Julien Franck, Maxence Wisztorski, Michel Salzet, and Isabelle Fournier

3. Biofluid Proteomics and Biomarkers in Traumatic Brain Injury

4. Degradomics in Neurotrauma: Profiling Traumatic Brain Injury

            Hadi Abou-El-Hassan, Fares Sukhon, Edwyn Assaf, Hisham Bahmad, Hussein Abou-Abbass, Hussam Jourdi, and Firas H. Kobeissy

5. Evolving Relevance of Neuroproteomics in Alzheimer’s Disease

            Simone Lista, Henrik Zetterberg, Sid E. O’Bryant, Kaj Blennow, and Harald Hampel

6. Genome to Phenome: A Systems Biology Approach to PTSD Using an Animal Model

            Nabarun Chakraborty, James Meyerhoff, Marti Jett, and Rasha Hammamieh

Part II: Experimental Methods

7. Photoaffinity Labeling of Pentameric Ligand-Gated Ion Channels to Identify: A Proteomic Approach to Identify Allosteric Ligand Binding Sites

            Selwyn S. Jayakar, Gordon Ang, David C. Chiara, and Ayman K. Hamouda

8. Quantitative Phosphoproteomic Analysis of Brain Tissues

9. Glycoproteins Enrichment and LC-MS/MS Glycoproteomics in Central Nervous System Applications

            Rui Zhu, Ehwang Song, Ahmed Hussein, Firas H. Kobeissy, and Yehia Mechref

10. A Novel 2-DE-Based Proteomic Analysis to Identify Multiple Substrates for Specific Protease in Neuronal Cells

            Chiho Kim and Young J. Oh

11. Neuroproteomic Profiling of Cerebrospinal Fluid (CSF) by Multiplexed Affinity Arrays

12. Isolation and Proteomic Analysis of Microvesicles and Exosomes from HT22 Cells and Primary Neurons

            Richard Witas, Dale Chaput, Hirah Khan, Stanley M. Stevens, Jr., and David Kang

13. Combined MALDI Mass Spectrometry Imaging and Parafilm-Assisted Microdissection-Based LC-MS/MS Workflows in the Study of the Brain

            Jusal Quanico, Julien Franck, Maxence Wisztorski, Michel Salzet, and Isabelle Fournier

14. De Novo and Uninterrupted SILAC Labeling of Primary Microglia

            Ping Zhang, Ashley Culver-Cochran, Stanley M. Stevens, Jr., and Bin Liu

15. Spike-In SILAC Approach for Proteomic Analysis of Ex Vivo Microglia

            Joao Paulo Costa Pinho, Harris Bell-Temin, Bin Liu, and Stanley M. Stevens, Jr.

16. A Proteomic Evaluation of Sympathetic Activity Biomarkers of the Hypothalamus-Pituitary-Adrenal Axis by Western Blotting Technique Following Experimental Traumatic Brain Injury

Part III: Bioinformatic and Computational Methods

17. Efficient and Accurate Algorithm for Cleaved Fragments Prediction (CFPA)

in Protein Sequences Dataset Based on Consensus and Its Variants:  A Novel Degradomics Prediction Application

            Atlal El-Assaad, Zaher Dawy, Georges Nemer, Hazem Hajj, and Firas H. Kobeissy

18. Effect of Second-Hand Tobacco Smoke on the Nitration of Brain Proteins: A Systems Biology & Bioinformatics Approach

19. An Advanced Omic Approach to Identify Co-Regulated Clusters and Transcription Regulation Network with AGCT and SHOE Methods

            Natalia Polouliakh and Richard Nock

20. AutoDock and AutoDockTools for Protein-Ligand Docking: Beta-Site Amyloid Precursor Protein Cleaving Enzyme 1(BACE1) as a Case Study

            Nehme El-Hachem, Benjamin Haibe-Kains, Athar Khalil, Firas H. Kobeissy, and Georges Nemer

21. An Integration of Decision Tree and Visual Analysis to Analyze Intracranial Pressure

            Soo-Yeon Ji, Kayvan Najarian, Toan Huyn, and Dong Hyun Jeong

Includes fully updated cutting-edge techniques for the study of neuroproteomics

Provides step-by-step detail essential for reproducible results

Contains key implementation advice from the experts