Transcription Factor Regulatory Networks, 2014 Methods and Protocols Methods in Molecular Biology Series, Vol. 1164

Detecting Protein-protein Interactions/Complex Components using Mass Spectrometry Coupled Techniques.- The Analysis of Transcription Factor Networks using the IVV Method.- Next-generation Sequencing Coupled with a Cell-free Display Technology for Reliable Interactome of Translational Factors.- Chromatin Immunoprecipitation Protocol for Mammalian Cells.- Detecting Protein–DNA Interactions using a Modified Yeast One-hybrid System.- RNA Sequencing: From Sample Preparation to Analysis.- Detecting Expressed Genes using CAGE.- A Tutorial to Identify Nonlinear Associations in Gene Expression Time Series Data.- Inference of TFRNs (2).- Identification of the Minimal Connected Network of Transcription Factors by Transcriptomic and Genomic Data Integration.- Modeling and Simulation using Cell Designer.- Human Genome Network Platform: A Resource for TFRN Analysis.- Identification of Transcription Factors Activated in Thymic Epithelial Cells During Embryonic Thymus Development.- Analysis of NFATc1-centered Transcription Factor Regulatory Networks in Osteoclast Formation.- Transcriptional Regulation in Adipogenesis through PPARγ-dependent and –Independent Mechanisms by Prostaglandins.- Analysis of TFRNs Associated with Steroid Hormone-related Cancers.- Repositioning Monocyte TFRN into Fibroblasts.

Includes cutting-edge methods and protocols Provides step-by-step detail essential for reproducible results Contains key notes and implementation advice from the experts